PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011071262.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family TCP
Protein Properties Length: 290aa    MW: 32880.9 Da    PI: 9.0254
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011071262.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP144.11e-44181742133
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........ssssa.....sec...eaesss 79 
                     +gkkdrhski+T++g RdRR+Rls+++a++fFdLqd LG+dk+sktieWL++++k+aikel+++         +s+++     sec   +     
  XP_011071262.1  18 TGKKDRHSKICTAQGIRDRRMRLSLQVARKFFDLQDLLGYDKASKTIEWLFTKSKKAIKELAKDhphanfnfsTSDAKsesflSECevvS----- 107
                     79**************************************************************88888877623333333444443332..... PP

             TCP  80 ssasnsssg...............kaaksaakskksqksaasalnlakesrakarararertrekmrik 133
                        +++ s+                 + s    +++++ +a+    a+esr+kararar rtrekm+ k
  XP_011071262.1 108 -GIEENYSNevkdsnialpdesvvPLCISRDDDERKPHMPAC-KPNARESREKARARARCRTREKMMVK 174
                     .22222222444566779988777445555555566666663.445669*****************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.5E-4618172IPR005333Transcription factor, TCP
PROSITE profilePS5136936.1842078IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.128153170IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MVAPSRRRNL GAIPRRRTGK KDRHSKICTA QGIRDRRMRL SLQVARKFFD LQDLLGYDKA  60
SKTIEWLFTK SKKAIKELAK DHPHANFNFS TSDAKSESFL SECEVVSGIE ENYSNEVKDS  120
NIALPDESVV PLCISRDDDE RKPHMPACKP NARESREKAR ARARCRTREK MMVKRLKFQE  180
SNSQNKEVRV SPYEAHHIDL CNSLEQQLSD VGAIEKFLAS SSSSMSCPMI CDYQASAGYT  240
DPNSNFIGFS GNWDVLNYNE RTSSLHYAVT NQVSLAGNPN SIYSSGTDYY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071262.10.0PREDICTED: transcription factor TCP12-like
TrEMBLS8DNE31e-64S8DNE3_9LAMI; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24362359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.15e-31TCP domain protein 12